Function reference • biodosetools

Shiny app

Run Biodose Tools Shiny app.

run_app(): Run the Shiny Application

Fitting

Fit and visualise calibration dose-effect curve.

fit(): Perform dose-effect fitting algorithm

plot_fit_dose_curve(): Plot fit dose curve

Dose estimation

Estimate and visualise uncertainties on dose estimations.

estimate_whole_body_merkle(): Whole-body dose estimation (Merkle's method)

estimate_whole_body_delta(): Whole-body dose estimation (delta method)

estimate_partial_body_dolphin(): Partial-body dose estimation (Dolphin's method)

estimate_hetero_mixed_poisson(): Heterogeneous dose estimation (Mixed Poisson model)

plot_estimated_dose_curve(): Plot dose estimation curve

Auxiliary

Auxiliary functions used in the fitting and dose estimation pipelines.

calculate_aberr_table(): Calculate aberrations table

protracted_g_function(): Calculate protracted function \(G(x)\)

calculate_genome_factor(): Calculate genomic conversion factor

calculate_trans_rate_sigurdson(): Calculate Sigurdson's translocation rate

calculate_trans_rate_manual(): Calculate manual translocation rate