Package index • biodosetools

Shiny app

Run Biodose Tools Shiny app.

run_app(): Run the Shiny Application

Fitting

Fit and visualise calibration dose-effect curve.

fit(): Perform dose-effect fitting algorithm

plot_fit_dose_curve(): Plot fit dose curve

Dose estimation

Estimate and visualise uncertainties on dose estimations.

estimate_whole_body_merkle(): Whole-body dose estimation (Merkle's method)

estimate_whole_body_delta(): Whole-body dose estimation (delta method)

estimate_partial_body_dolphin(): Partial-body dose estimation (Dolphin's method)

estimate_hetero_mixed_poisson(): Heterogeneous dose estimation (Mixed Poisson model)

plot_estimated_dose_curve(): Plot dose estimation curve

Auxiliary

Auxiliary functions used in the fitting and dose estimation pipelines.

calculate_aberr_table(): Calculate aberrations table

protracted_g_function(): Calculate protracted function \(G(x)\)

calculate_genome_factor(): Calculate genomic conversion factor

calculate_trans_rate_sigurdson(): Calculate Sigurdson's translocation rate

calculate_trans_rate_manual(): Calculate manual translocation rate

Intercomparison

Graphics and functions for the interlaboratory comparison module.

calc.zValue.new(): Calculate ZScore

bar_plots(): Bar plots dosimetry

curves_plot(): Plot curves

DI_plot(): Dispersion index

dose_boxplot(): Boxplot dose estimates

M_estimate(): Calculate algB

plot_deviation_all(): Plot Deviaition from ref dose all blind samples

plot_interlab_deviation(): Plot deviation

plot_interlab_v2(): Plot zscore v2

plot_triage(): Plot triage

plot_triage_interlab(): Plot triage interlab

plot_zscore_all(): Plot Z-scores all blind samples

QHampel(): Calculate QHampel

u_test_plot(): U-test

yield_boxplot(): Boxplot yield

criticality accidents

dose_estimation_mx(): Prepare data to dose estimate using mixed fields manual

fun.estimate.criticality(): Calculate absorbed dose for mixed fields exposure

plot_estimated_dose_curve_mx(): Criticality Plot

characteristic limits

calculate_table(): Calculate the characteristic limits table